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PRPF39 pre-mRNA processing factor 39 [ Pterocles gutturalis (yellow-throated sandgrouse) ]

Gene ID: 104463912, updated on 12-Mar-2024

Summary

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Gene symbol
PRPF39
Gene description
pre-mRNA processing factor 39
Locus tag
N339_06674
Gene type
protein coding
RefSeq status
MODEL
Organism
Pterocles gutturalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Ciconiiformes; Pteroclidae; Pterocles
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current ASM69924v1 (GCF_000699245.1) Unplaced Scaffold NW_010118991.1 (2747..14463)

NW_010118991.1Genomic Context describing neighboring genes Neighboring gene FKBP prolyl isomerase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010118991.1 Unplaced Scaffold Reference ASM69924v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA 5'-splice site recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of commitment complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: pre-mRNA-processing factor 39
Names
Pre-mRNA-processing factor 39

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pterocles gutturalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69924v1

Genomic

  1. NW_010118991.1 Reference ASM69924v1

    Range
    2747..14463
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010076423.1 → XP_010074725.1  LOW QUALITY PROTEIN: pre-mRNA-processing factor 39

    UniProtKB/TrEMBL
    A0A093C8L5
    Conserved Domains (2) summary
    smart00386
    Location:373 → 405
    HAT; HAT (Half-A-TPR) repeats
    COG5107
    Location:84 → 461
    RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Nucleotide Protein
Heading Accession and Version

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