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TRIM71 tripartite motif containing 71 [ Nestor notabilis (Kea) ]

Gene ID: 104411603, updated on 12-Mar-2024

Summary

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Gene symbol
TRIM71
Gene description
tripartite motif containing 71
Gene type
protein coding
RefSeq status
MODEL
Organism
Nestor notabilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Psittaciformes; Psittacidae; Nestor
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current ASM69687v1 (GCF_000696875.1) Unplaced Scaffold NW_009943697.1 (19798..32884, complement)

NW_009943697.1Genomic Context describing neighboring genes Neighboring gene CCR4-NOT transcription complex subunit 10-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009943697.1 Unplaced Scaffold Reference ASM69687v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM71

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nestor notabilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69687v1

Genomic

  1. NW_009943697.1 Reference ASM69687v1

    Range
    19798..32884 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010022058.1 → XP_010020360.1  LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM71

    Conserved Domains (5) summary
    smart00557
    Location:145 → 242
    IG_FLMN; Filamin-type immunoglobulin domains
    COG3391
    Location:270 → 520
    YncE; DNA-binding beta-propeller fold protein YncE [General function prediction only]
    cd14954
    Location:245 → 529
    NHL_TRIM71_like; NHL repeat domain of the tripartite motif-containing protein 71 (TRIM71) and related proteins
    pfam00630
    Location:143 → 238
    Filamin; Filamin/ABP280 repeat
    cl23765
    Location:12 → 113
    iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits
Nucleotide Protein
Heading Accession and Version

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