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SMARCA1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 [ Nestor notabilis (Kea) ]

Gene ID: 104405381, updated on 12-Mar-2024

Summary

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Gene symbol
SMARCA1
Gene description
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
Locus tag
N333_00620
Gene type
protein coding
RefSeq status
MODEL
Organism
Nestor notabilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Psittaciformes; Psittacidae; Nestor
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
100 current ASM69687v1 (GCF_000696875.1) Unplaced Scaffold NW_009911328.1 (3802..32076)

NW_009911328.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009911328.1 Unplaced Scaffold Reference ASM69687v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable global transcription activator SNF2L1
Names
putative global transcription activator SNF2L1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nestor notabilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69687v1

Genomic

  1. NW_009911328.1 Reference ASM69687v1

    Range
    3802..32076
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010014077.1 → XP_010012379.1  probable global transcription activator SNF2L1

    UniProtKB/TrEMBL
    A0A091RPE7
    Conserved Domains (7) summary
    PLN03142
    Location:29 → 999
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd00046
    Location:145 → 284
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00167
    Location:789 → 828
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam00271
    Location:427 → 542
    Helicase_C; Helicase conserved C-terminal domain
    pfam09110
    Location:688 → 772
    HAND; HAND
    pfam09111
    Location:843 → 955
    SLIDE; SLIDE
    pfam13892
    Location:26 → 52
    DBINO; DNA-binding domain
Nucleotide Protein
Heading Accession and Version

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