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SCLT1 sodium channel and clathrin linker 1 [ Chaetura pelagica (chimney swift) ]

Gene ID: 104398828, updated on 12-Mar-2024

Summary

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Gene symbol
SCLT1
Gene description
sodium channel and clathrin linker 1
Locus tag
M959_05110
Gene type
protein coding
RefSeq status
MODEL
Organism
Chaetura pelagica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Apodiformes; Apodidae; Apodinae; Chaetura
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current ChaPel_1.0 (GCF_000747805.1) Unplaced Scaffold NW_009952533.1 (2719539..2763209, complement)

NW_009952533.1Genomic Context describing neighboring genes Neighboring gene progesterone receptor membrane component 2 Neighboring gene chromosome unknown open reading frame, human C4orf33 Neighboring gene jade family PHD finger 1 Neighboring gene protocadherin 10

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009952533.1 Unplaced Scaffold Reference ChaPel_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in clustering of voltage-gated sodium channels IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in centriole IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium channel and clathrin linker 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chaetura pelagica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChaPel_1.0

Genomic

  1. NW_009952533.1 Reference ChaPel_1.0

    Range
    2719539..2763209 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010008983.1 → XP_010007285.1  sodium channel and clathrin linker 1

    Conserved Domains (3) summary
    COG1196
    Location:172 → 520
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    PRK05771
    Location:396 → 658
    PRK05771; V-type ATP synthase subunit I; Validated
    TIGR02169
    Location:41 → 299
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
Nucleotide Protein
Heading Accession and Version

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