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COL6A6 collagen type VI alpha 6 chain [ Chaetura pelagica (chimney swift) ]

Gene ID: 104397599, updated on 12-Mar-2024

Summary

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Gene symbol
COL6A6
Gene description
collagen type VI alpha 6 chain
Locus tag
M959_00151
Gene type
protein coding
RefSeq status
MODEL
Organism
Chaetura pelagica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Apodiformes; Apodidae; Apodinae; Chaetura
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current ChaPel_1.0 (GCF_000747805.1) Unplaced Scaffold NW_009952263.1 (832841..844256, complement)

NW_009952263.1Genomic Context describing neighboring genes Neighboring gene phosphoinositide-3-kinase regulatory subunit 4 Neighboring gene amyloid beta A4 protein-like Neighboring gene collagen alpha-4(VI) chain-like Neighboring gene calpain 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009952263.1 Unplaced Scaffold Reference ChaPel_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
collagen alpha-6(VI) chain
Names
Collagen alpha-4(VI) chain
Collagen alpha-5(VI) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chaetura pelagica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChaPel_1.0

Genomic

  1. NW_009952263.1 Reference ChaPel_1.0

    Range
    832841..844256 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010007599.1 → XP_010005901.1  collagen alpha-6(VI) chain

    Conserved Domains (3) summary
    pfam01391
    Location:66 → 124
    Collagen; Collagen triple helix repeat (20 copies)
    cd01450
    Location:363 → 541
    vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    pfam00092
    Location:159 → 323
    VWA; von Willebrand factor type A domain
Nucleotide Protein
Heading Accession and Version

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