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PCMTD1 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 [ Chaetura pelagica (chimney swift) ]

Gene ID: 104396906, updated on 12-Mar-2024

Summary

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Gene symbol
PCMTD1
Gene description
protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
Locus tag
M959_00894
Gene type
protein coding
RefSeq status
MODEL
Organism
Chaetura pelagica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Apodiformes; Apodidae; Apodinae; Chaetura
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current ChaPel_1.0 (GCF_000747805.1) Unplaced Scaffold NW_009970725.1 (1735098..1758447)

NW_009970725.1Genomic Context describing neighboring genes Neighboring gene ALK and LTK ligand 1 Neighboring gene ST18 C2H2C-type zinc finger transcription factor Neighboring gene syntrophin gamma 1 Neighboring gene pancreatic progenitor cell differentiation and proliferation factor like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009970725.1 Unplaced Scaffold Reference ChaPel_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-L-isoaspartate (D-aspartate) O-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein modification process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein-L-isoaspartate O-methyltransferase domain-containing protein 1
Names
Protein-L-isoaspartate O-methyltransferase domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chaetura pelagica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChaPel_1.0

Genomic

  1. NW_009970725.1 Reference ChaPel_1.0

    Range
    1735098..1758447
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010006811.1 → XP_010005113.1  protein-L-isoaspartate O-methyltransferase domain-containing protein 1

    See identical proteins and their annotated locations for XP_010005113.1

    Conserved Domains (3) summary
    pfam01135
    Location:11 → 219
    PCMT; Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
    cl02533
    Location:336 → 355
    SOCS; SOCS (suppressors of cytokine signaling) box. The SOCS box is found in the C-terminal region of CIS/SOCS family proteins (in combination with a SH2 domain), ASBs (ankyrin repeat-containing proteins with a SOCS box), SSBs (SPRY domain-containing proteins ...
    cl17173
    Location:14 → 221
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein
Heading Accession and Version

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