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ATP10D ATPase phospholipid transporting 10D (putative) [ Chaetura pelagica (chimney swift) ]

Gene ID: 104396309, updated on 12-Mar-2024

Summary

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Gene symbol
ATP10D
Gene description
ATPase phospholipid transporting 10D (putative)
Locus tag
M959_04212
Gene type
protein coding
RefSeq status
MODEL
Organism
Chaetura pelagica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Apodiformes; Apodidae; Apodinae; Chaetura
Orthologs
human all
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Genomic context

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See ATP10D in Genome Data Viewer
Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
100 current ChaPel_1.0 (GCF_000747805.1) Unplaced Scaffold NW_009970716.1 (754557..791161, complement)

NW_009970716.1Genomic Context describing neighboring genes Neighboring gene nuclear transcription factor, X-box binding like 1 Neighboring gene corin, serine peptidase Neighboring gene COMM domain containing 8 Neighboring gene gamma-aminobutyric acid type A receptor subunit beta1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009970716.1 Unplaced Scaffold Reference ChaPel_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATPase-coupled intramembrane lipid transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phospholipid translocation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: probable phospholipid-transporting ATPase VD
Names
putative phospholipid-transporting ATPase VD

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chaetura pelagica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChaPel_1.0

Genomic

  1. NW_009970716.1 Reference ChaPel_1.0

    Range
    754557..791161 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010006142.1 → XP_010004444.1  LOW QUALITY PROTEIN: probable phospholipid-transporting ATPase VD

    Conserved Domains (5) summary
    TIGR01652
    Location:64 → 1313
    ATPase-Plipid; phospholipid-translocating P-type ATPase, flippase
    pfam13246
    Location:713 → 794
    Cation_ATPase; Cation transport ATPase (P-type)
    pfam16209
    Location:52 → 115
    PhoLip_ATPase_N; Phospholipid-translocating ATPase N-terminal
    pfam16212
    Location:1068 → 1313
    PhoLip_ATPase_C; Phospholipid-translocating P-type ATPase C-terminal
    cl21460
    Location:1037 → 1085
    HAD_like; Haloacid Dehalogenase-like Hydrolases
Nucleotide Protein
Heading Accession and Version

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