U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ITSN2 intersectin 2 [ Chaetura pelagica (chimney swift) ]

Gene ID: 104392973, updated on 12-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
ITSN2
Gene description
intersectin 2
Locus tag
M959_10412
Gene type
protein coding
RefSeq status
MODEL
Organism
Chaetura pelagica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Apodiformes; Apodidae; Apodinae; Chaetura
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
39
Annotation release Status Assembly Chr Location
100 current ChaPel_1.0 (GCF_000747805.1) Unplaced Scaffold NW_009954102.1 (5197090..5250692, complement)

NW_009954102.1Genomic Context describing neighboring genes Neighboring gene profilin family member 4 Neighboring gene family with sequence similarity 228 member B Neighboring gene GC-rich sequence DNA-binding factor 2 Neighboring gene GC-rich sequence DNA-binding factor 2-like Neighboring gene mitochondrial ribosomal protein L19

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_009954102.1 Unplaced Scaffold Reference ChaPel_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of Rho protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
intersectin-2
Names
Intersectin-2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Chaetura pelagica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChaPel_1.0

Genomic

  1. NW_009954102.1 Reference ChaPel_1.0

    Range
    5197090..5250692 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010002419.1 → XP_010000721.1  intersectin-2

    Conserved Domains (15) summary
    cd08375
    Location:1650 → 1784
    C2_Intersectin; C2 domain present in Intersectin
    smart00027
    Location:17 → 109
    EH; Eps15 homology domain
    cd11988
    Location:857 → 913
    SH3_Intersectin2_1; First Src homology 3 domain (or SH3A) of Intersectin-2
    cd11990
    Location:998 → 1049
    SH3_Intersectin2_2; Second Src homology 3 domain (or SH3B) of Intersectin-2
    cd11992
    Location:1081 → 1132
    SH3_Intersectin2_3; Third Src homology 3 domain (or SH3C) of Intersectin-2
    cd11994
    Location:1153 → 1211
    SH3_Intersectin2_4; Fourth Src homology 3 domain (or SH3D) of Intersectin-2
    cd11996
    Location:1226 → 1279
    SH3_Intersectin2_5; Fifth Src homology 3 domain (or SH3E) of Intersectin-2
    cd00052
    Location:249 → 315
    EH; Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A ...
    cd13264
    Location:1516 → 1647
    PH_ITSN; Intersectin Pleckstrin homology (PH) domain
    pfam00169
    Location:1531 → 1639
    PH; PH domain
    pfam00621
    Location:1310 → 1490
    RhoGEF; RhoGEF domain
    pfam13499
    Location:250 → 307
    EF-hand_7; EF-hand domain pair
    pfam13868
    Location:450 → 802
    TPH; Trichohyalin-plectin-homology domain
    pfam16617
    Location:913 → 998
    INTAP; Intersectin and clathrin adaptor AP2 binding region
    cl20817
    Location:725 → 817
    GBP_C; Guanylate-binding protein, C-terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.