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HCN3 hyperpolarization activated cyclic nucleotide gated potassium channel 3 [ Chaetura pelagica (chimney swift) ]

Gene ID: 104387369, updated on 12-Mar-2024

Summary

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Gene symbol
HCN3
Gene description
hyperpolarization activated cyclic nucleotide gated potassium channel 3
Locus tag
M959_06328
Gene type
protein coding
RefSeq status
MODEL
Organism
Chaetura pelagica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Apodiformes; Apodidae; Apodinae; Chaetura
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current ChaPel_1.0 (GCF_000747805.1) Unplaced Scaffold NW_009951925.1 (368536..373571, complement)

NW_009951925.1Genomic Context describing neighboring genes Neighboring gene RUN and SH3 domain containing 1 Neighboring gene farnesyl diphosphate synthase Neighboring gene CDC like kinase 2 Neighboring gene protein FAM189B-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009951925.1 Unplaced Scaffold Reference ChaPel_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables voltage-gated potassium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in potassium ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3
Names
Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chaetura pelagica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChaPel_1.0

Genomic

  1. NW_009951925.1 Reference ChaPel_1.0

    Range
    368536..373571 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009996123.1 → XP_009994425.1  potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3

    Conserved Domains (4) summary
    COG0664
    Location:336 → 474
    Crp; cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
    cd00038
    Location:342 → 450
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
    pfam00520
    Location:25 → 272
    Ion_trans; Ion transport protein
    pfam17037
    Location:485 → 661
    CBP_BcsO; Cellulose biosynthesis protein BcsO
Nucleotide Protein
Heading Accession and Version

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