U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TOM1L1 target of myb1 like 1 membrane trafficking protein [ Tyto alba (common barn owl) ]

Gene ID: 104368641, updated on 12-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
TOM1L1
Gene description
target of myb1 like 1 membrane trafficking protein
Locus tag
N341_13001
Gene type
protein coding
RefSeq status
MODEL
Organism
Tyto alba
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Strigiformes; Tytonidae; Tyto
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
102 current T.alba_DEE_v4.0 (GCF_018691265.1) Unplaced Scaffold NW_024881314.1 (5669240..5696133, complement)
100 previous assembly ASM68720v1 (GCF_000687205.1) Unplaced Scaffold NW_009979067.1 (4880..25644, complement)

NW_024881314.1Genomic Context describing neighboring genes Neighboring gene HLF transcription factor, PAR bZIP family member Neighboring gene cytochrome c oxidase assembly protein COX11, mitochondrial Neighboring gene syntaxin binding protein 4 Neighboring gene kinesin-like protein KIF2A Neighboring gene carbonic anhydrase 10

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables clathrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
TOM1-like protein 1
Names
TOM1-like 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Tyto alba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T.alba_DEE_v4.0

Genomic

  1. NW_024881314.1 Reference T.alba_DEE_v4.0

    Range
    5669240..5696133 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033002622.2 → XP_032858513.2  TOM1-like protein 1 isoform X2

    Conserved Domains (2) summary
    cd16997
    Location:14 → 150
    VHS_Tom1L1; VHS (Vps27/Hrs/STAM) domain of TOM1-like protein 1
    cl03906
    Location:198 → 289
    GAT_SF; GAT domain found in eukaryotic GGAs, metazoan Tom1-like proteins, metazoan STAMs, fungal Vps27, and similar proteins

  2. XM_042802374.1 → XP_042658308.1  TOM1-like protein 1 isoform X1

    Conserved Domains (3) summary
    PHA03307
    Location:26 → 167
    PHA03307; transcriptional regulator ICP4; Provisional
    cl02544
    Location:186 → 261
    VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily
    cl03906
    Location:309 → 400
    GAT_SF; GAT domain found in eukaryotic GGAs, metazoan Tom1-like proteins, metazoan STAMs, fungal Vps27, and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.