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PDZRN4 PDZ domain containing ring finger 4 [ Tyto alba (common barn owl) ]

Gene ID: 104367905, updated on 12-Mar-2024

Summary

Gene symbol
PDZRN4
Gene description
PDZ domain containing ring finger 4
Locus tag
N341_12422
Gene type
protein coding
RefSeq status
MODEL
Organism
Tyto alba
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Strigiformes; Tytonidae; Tyto
Orthologs
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Genomic context

Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
102 current T.alba_DEE_v4.0 (GCF_018691265.1) Unplaced Scaffold NW_024881282.1 (58261783..58517193, complement)
100 previous assembly ASM68720v1 (GCF_000687205.1) Unplaced Scaffold NW_009976246.1 (68411..176595, complement)

NW_024881282.1Genomic Context describing neighboring genes Neighboring gene YY1 associated factor 2 Neighboring gene glucoside xylosyltransferase 1 Neighboring gene contactin 1 Neighboring gene neuronal cell adhesion molecule

Genomic regions, transcripts, and products

General protein information

Preferred Names
PDZ domain-containing RING finger protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tyto alba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T.alba_DEE_v4.0

Genomic

  1. NW_024881282.1 Reference T.alba_DEE_v4.0

    Range
    58261783..58517193 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042793387.1XP_042649321.1  PDZ domain-containing RING finger protein 4 isoform X1

    Conserved Domains (3) summary
    smart00228
    Location:228319
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:407489
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd16719
    Location:1745
    RING-HC_LNX4; RING finger, HC subclass, found in ligand of numb protein X 4 (LNX4)
  2. XM_042793388.1XP_042649322.1  PDZ domain-containing RING finger protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A093ES17
    Conserved Domains (2) summary
    smart00228
    Location:2455
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:143225
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...