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PPFIA4 PTPRF interacting protein alpha 4 [ Tyto alba (common barn owl) ]

Gene ID: 104366962, updated on 12-Mar-2024

Summary

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Gene symbol
PPFIA4
Gene description
PTPRF interacting protein alpha 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Tyto alba
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Strigiformes; Tytonidae; Tyto
Orthologs
human mouse all
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Genomic context

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See PPFIA4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
34
Annotation release Status Assembly Chr Location
102 current T.alba_DEE_v4.0 (GCF_018691265.1) Unplaced Scaffold NW_024881305.1 (1489267..1548415)
100 previous assembly ASM68720v1 (GCF_000687205.1) Unplaced Scaffold NW_009975740.1 (2957..17728, complement)

NW_024881305.1Genomic Context describing neighboring genes Neighboring gene alpha-1,6-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like Neighboring gene transmembrane protein 183A Neighboring gene myogenin Neighboring gene adenosine A1 receptor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in synapse organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in presynaptic active zone IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
liprin-alpha-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tyto alba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T.alba_DEE_v4.0

Genomic

  1. NW_024881305.1 Reference T.alba_DEE_v4.0

    Range
    1489267..1548415
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033001932.2 → XP_032857823.1  liprin-alpha-4 isoform X1

    Conserved Domains (5) summary
    cd09562
    Location:870 → 940
    SAM_liprin-alpha1,2,3,4_repeat1; SAM domain of liprin-alpha1,2,3,4 proteins repeat 1
    cd09565
    Location:987 → 1052
    SAM_liprin-alpha1,2,3,4_repeat2; SAM domain of liprin-alpha1,2,3,4 proteins repeat 2
    cd09568
    Location:1072 → 1143
    SAM_liprin-alpha1,2,3,4_repeat3; SAM domain of liprin-alpha1,2,3,4 proteins repeat 3
    COG1196
    Location:261 → 506
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:37 → 452
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  2. XM_033001931.2 → XP_032857822.1  liprin-alpha-4 isoform X1

    Conserved Domains (5) summary
    cd09562
    Location:870 → 940
    SAM_liprin-alpha1,2,3,4_repeat1; SAM domain of liprin-alpha1,2,3,4 proteins repeat 1
    cd09565
    Location:987 → 1052
    SAM_liprin-alpha1,2,3,4_repeat2; SAM domain of liprin-alpha1,2,3,4 proteins repeat 2
    cd09568
    Location:1072 → 1143
    SAM_liprin-alpha1,2,3,4_repeat3; SAM domain of liprin-alpha1,2,3,4 proteins repeat 3
    COG1196
    Location:261 → 506
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:37 → 452
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  3. XM_033001934.2 → XP_032857825.1  liprin-alpha-4 isoform X1

    Conserved Domains (5) summary
    cd09562
    Location:870 → 940
    SAM_liprin-alpha1,2,3,4_repeat1; SAM domain of liprin-alpha1,2,3,4 proteins repeat 1
    cd09565
    Location:987 → 1052
    SAM_liprin-alpha1,2,3,4_repeat2; SAM domain of liprin-alpha1,2,3,4 proteins repeat 2
    cd09568
    Location:1072 → 1143
    SAM_liprin-alpha1,2,3,4_repeat3; SAM domain of liprin-alpha1,2,3,4 proteins repeat 3
    COG1196
    Location:261 → 506
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:37 → 452
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  4. XM_033001936.2 → XP_032857827.1  liprin-alpha-4 isoform X1

    Conserved Domains (5) summary
    cd09562
    Location:870 → 940
    SAM_liprin-alpha1,2,3,4_repeat1; SAM domain of liprin-alpha1,2,3,4 proteins repeat 1
    cd09565
    Location:987 → 1052
    SAM_liprin-alpha1,2,3,4_repeat2; SAM domain of liprin-alpha1,2,3,4 proteins repeat 2
    cd09568
    Location:1072 → 1143
    SAM_liprin-alpha1,2,3,4_repeat3; SAM domain of liprin-alpha1,2,3,4 proteins repeat 3
    COG1196
    Location:261 → 506
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:37 → 452
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  5. XM_033001937.2 → XP_032857828.1  liprin-alpha-4 isoform X2

    Conserved Domains (5) summary
    cd09562
    Location:870 → 940
    SAM_liprin-alpha1,2,3,4_repeat1; SAM domain of liprin-alpha1,2,3,4 proteins repeat 1
    cd09565
    Location:978 → 1043
    SAM_liprin-alpha1,2,3,4_repeat2; SAM domain of liprin-alpha1,2,3,4 proteins repeat 2
    cd09568
    Location:1063 → 1134
    SAM_liprin-alpha1,2,3,4_repeat3; SAM domain of liprin-alpha1,2,3,4 proteins repeat 3
    COG1196
    Location:261 → 506
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:37 → 452
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  6. XM_033001938.2 → XP_032857829.1  liprin-alpha-4 isoform X3

    Conserved Domains (5) summary
    cd09562
    Location:858 → 928
    SAM_liprin-alpha1,2,3,4_repeat1; SAM domain of liprin-alpha1,2,3,4 proteins repeat 1
    cd09565
    Location:975 → 1040
    SAM_liprin-alpha1,2,3,4_repeat2; SAM domain of liprin-alpha1,2,3,4 proteins repeat 2
    cd09568
    Location:1060 → 1131
    SAM_liprin-alpha1,2,3,4_repeat3; SAM domain of liprin-alpha1,2,3,4 proteins repeat 3
    COG1196
    Location:261 → 506
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:37 → 452
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  7. XM_033001939.2 → XP_032857830.1  liprin-alpha-4 isoform X4

    Conserved Domains (5) summary
    cd09562
    Location:849 → 919
    SAM_liprin-alpha1,2,3,4_repeat1; SAM domain of liprin-alpha1,2,3,4 proteins repeat 1
    cd09565
    Location:966 → 1031
    SAM_liprin-alpha1,2,3,4_repeat2; SAM domain of liprin-alpha1,2,3,4 proteins repeat 2
    cd09568
    Location:1051 → 1122
    SAM_liprin-alpha1,2,3,4_repeat3; SAM domain of liprin-alpha1,2,3,4 proteins repeat 3
    COG1196
    Location:238 → 485
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:45 → 422
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  8. XM_042800014.1 → XP_042655948.1  liprin-alpha-4 isoform X5

    Conserved Domains (5) summary
    cd09562
    Location:849 → 919
    SAM_liprin-alpha1,2,3,4_repeat1; SAM domain of liprin-alpha1,2,3,4 proteins repeat 1
    cd09565
    Location:957 → 1022
    SAM_liprin-alpha1,2,3,4_repeat2; SAM domain of liprin-alpha1,2,3,4 proteins repeat 2
    cd09568
    Location:1042 → 1113
    SAM_liprin-alpha1,2,3,4_repeat3; SAM domain of liprin-alpha1,2,3,4 proteins repeat 3
    COG1196
    Location:238 → 485
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02169
    Location:35 → 393
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

  9. XM_033001933.2 → XP_032857824.1  liprin-alpha-4 isoform X1

    Conserved Domains (5) summary
    cd09562
    Location:870 → 940
    SAM_liprin-alpha1,2,3,4_repeat1; SAM domain of liprin-alpha1,2,3,4 proteins repeat 1
    cd09565
    Location:987 → 1052
    SAM_liprin-alpha1,2,3,4_repeat2; SAM domain of liprin-alpha1,2,3,4 proteins repeat 2
    cd09568
    Location:1072 → 1143
    SAM_liprin-alpha1,2,3,4_repeat3; SAM domain of liprin-alpha1,2,3,4 proteins repeat 3
    COG1196
    Location:261 → 506
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:37 → 452
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  10. XM_033001940.2 → XP_032857831.1  liprin-alpha-4 isoform X6

    Conserved Domains (5) summary
    PTZ00121
    Location:105 → 598
    PTZ00121; MAEBL; Provisional
    cd09562
    Location:815 → 885
    SAM_liprin-alpha1,2,3,4_repeat1; SAM domain of liprin-alpha1,2,3,4 proteins repeat 1
    cd09565
    Location:932 → 997
    SAM_liprin-alpha1,2,3,4_repeat2; SAM domain of liprin-alpha1,2,3,4 proteins repeat 2
    cd09568
    Location:1017 → 1088
    SAM_liprin-alpha1,2,3,4_repeat3; SAM domain of liprin-alpha1,2,3,4 proteins repeat 3
    COG1196
    Location:206 → 451
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
Nucleotide Protein
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