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SCGN secretagogin, EF-hand calcium binding protein [ Tyto alba (common barn owl) ]

Gene ID: 104364773, updated on 12-Mar-2024

Summary

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Gene symbol
SCGN
Gene description
secretagogin, EF-hand calcium binding protein
Gene type
protein coding
RefSeq status
MODEL
Organism
Tyto alba
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Strigiformes; Tytonidae; Tyto
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
102 current T.alba_DEE_v4.0 (GCF_018691265.1) Unplaced Scaffold NW_024881301.1 (22067551..22097027)
100 previous assembly ASM68720v1 (GCF_000687205.1) Unplaced Scaffold NW_010013373.1 (111..28521)

NW_024881301.1Genomic Context describing neighboring genes Neighboring gene RHO family interacting cell polarization regulator 2 Neighboring gene capping protein regulator and myosin 1 linker 1 Neighboring gene uncharacterized LOC116960120 Neighboring gene par-6 family cell polarity regulator gamma Neighboring gene biogenesis of lysosomal organelles complex 1 subunit 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of long-term synaptic potentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of presynaptic cytosolic calcium ion concentration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in dendrite IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in terminal bouton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
secretagogin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tyto alba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T.alba_DEE_v4.0

Genomic

  1. NW_024881301.1 Reference T.alba_DEE_v4.0

    Range
    22067551..22097027
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042798107.1 → XP_042654041.1  secretagogin

    Conserved Domains (1) summary
    cd16178
    Location:14 → 270
    EFh_HEF_SCGN; EF-hand, calcium binding motif, found in secretagogin (SCGN)
Nucleotide Protein
Heading Accession and Version

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