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SORCS2 sortilin related VPS10 domain containing receptor 2 [ Tyto alba (common barn owl) ]

Gene ID: 104362478, updated on 12-Mar-2024

Summary

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Gene symbol
SORCS2
Gene description
sortilin related VPS10 domain containing receptor 2
Locus tag
N341_00841
Gene type
protein coding
RefSeq status
MODEL
Organism
Tyto alba
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Strigiformes; Tytonidae; Tyto
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
102 current T.alba_DEE_v4.0 (GCF_018691265.1) Unplaced Scaffold NW_024881327.1 (43124810..43688818)
100 previous assembly ASM68720v1 (GCF_000687205.1) Unplaced Scaffold NW_010004888.1 (60028..103103, complement)

NW_024881327.1Genomic Context describing neighboring genes Neighboring gene transcriptional adaptor 2B Neighboring gene GrpE like 1, mitochondrial Neighboring gene actin filament associated protein 1 Neighboring gene actin binding LIM protein family member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VPS10 domain-containing receptor SorCS2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tyto alba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T.alba_DEE_v4.0

Genomic

  1. NW_024881327.1 Reference T.alba_DEE_v4.0

    Range
    43124810..43688818
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042807690.1 → XP_042663624.1  VPS10 domain-containing receptor SorCS2 isoform X2

    Conserved Domains (2) summary
    smart00089
    Location:644 → 719
    PKD; Repeats in polycystic kidney disease 1 (PKD1) and other proteins
    smart00602
    Location:20 → 626
    VPS10; VPS10 domain

  2. XM_042807689.1 → XP_042663623.1  VPS10 domain-containing receptor SorCS2 isoform X1

    Conserved Domains (2) summary
    smart00089
    Location:644 → 719
    PKD; Repeats in polycystic kidney disease 1 (PKD1) and other proteins
    smart00602
    Location:20 → 626
    VPS10; VPS10 domain

  3. XM_042807691.1 → XP_042663625.1  VPS10 domain-containing receptor SorCS2 isoform X3

    Conserved Domains (2) summary
    smart00089
    Location:644 → 719
    PKD; Repeats in polycystic kidney disease 1 (PKD1) and other proteins
    smart00602
    Location:20 → 626
    VPS10; VPS10 domain

  4. XM_042807692.1 → XP_042663626.1  VPS10 domain-containing receptor SorCS2 isoform X4

    Conserved Domains (2) summary
    smart00089
    Location:622 → 697
    PKD; Repeats in polycystic kidney disease 1 (PKD1) and other proteins
    smart00602
    Location:1 → 604
    VPS10; VPS10 domain

  5. XM_042807693.1 → XP_042663627.1  VPS10 domain-containing receptor SorCS2 isoform X4

    Conserved Domains (2) summary
    smart00089
    Location:622 → 697
    PKD; Repeats in polycystic kidney disease 1 (PKD1) and other proteins
    smart00602
    Location:1 → 604
    VPS10; VPS10 domain
Nucleotide Protein
Heading Accession and Version

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