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SS18L1 SS18L1 subunit of BAF chromatin remodeling complex [ Tyto alba (common barn owl) ]

Gene ID: 104359159, updated on 12-Mar-2024

Summary

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Gene symbol
SS18L1
Gene description
SS18L1 subunit of BAF chromatin remodeling complex
Locus tag
N341_06675
Gene type
protein coding
RefSeq status
MODEL
Organism
Tyto alba
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Strigiformes; Tytonidae; Tyto
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
102 current T.alba_DEE_v4.0 (GCF_018691265.1) Unplaced Scaffold NW_024881308.1 (14019941..14037400)
100 previous assembly ASM68720v1 (GCF_000687205.1) Unplaced Scaffold NW_009991913.1 (41..15139)

NW_024881308.1Genomic Context describing neighboring genes Neighboring gene LSM family member 14B Neighboring gene proteasome 20S subunit alpha 7 Neighboring gene mitochondrial ribosome associated GTPase 2 Neighboring gene histamine receptor H3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of dendrite morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium-responsive transactivator
Names
Calcium-responsive transactivator
SS18L1, nBAF chromatin remodeling complex subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tyto alba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T.alba_DEE_v4.0

Genomic

  1. NW_024881308.1 Reference T.alba_DEE_v4.0

    Range
    14019941..14037400
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009964882.3 → XP_009963184.1  calcium-responsive transactivator

    See identical proteins and their annotated locations for XP_009963184.1

    UniProtKB/TrEMBL
    A0A093H149
    Conserved Domains (1) summary
    pfam05030
    Location:14 → 73
    SSXT; SSXT protein (N-terminal region)
Nucleotide Protein
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