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NR2C1 nuclear receptor subfamily 2 group C member 1 [ Tyto alba (common barn owl) ]

Gene ID: 104358661, updated on 12-Mar-2024

Summary

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Gene symbol
NR2C1
Gene description
nuclear receptor subfamily 2 group C member 1
Locus tag
N341_00723
Gene type
protein coding
RefSeq status
MODEL
Organism
Tyto alba
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Strigiformes; Tytonidae; Tyto
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
102 current T.alba_DEE_v4.0 (GCF_018691265.1) Unplaced Scaffold NW_024881282.1 (40073746..40127898)
100 previous assembly ASM68720v1 (GCF_000687205.1) Unplaced Scaffold NW_009990017.1 (13455..48684)

NW_024881282.1Genomic Context describing neighboring genes Neighboring gene vezatin, adherens junctions transmembrane protein Neighboring gene FYVE, RhoGEF and PH domain containing 6 Neighboring gene NADH:ubiquinone oxidoreductase subunit A12 Neighboring gene transmembrane and coiled-coil domain family 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear receptor subfamily 2 group C member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tyto alba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T.alba_DEE_v4.0

Genomic

  1. NW_024881282.1 Reference T.alba_DEE_v4.0

    Range
    40073746..40127898
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042792846.1 → XP_042648780.1  nuclear receptor subfamily 2 group C member 1 isoform X1

    UniProtKB/TrEMBL
    A0A093GZ62
    Conserved Domains (2) summary
    cd06952
    Location:404 → 625
    NR_LBD_TR2_like; The ligand binding domain of the orphan nuclear receptors TR4 and TR2
    cd06967
    Location:145 → 231
    NR_DBD_TR2_like; DNA-binding domain of the TR2 and TR4 (human testicular receptor 2 and 4) is composed of two C4-type zinc fingers

  2. XM_033010190.2 → XP_032866081.1  nuclear receptor subfamily 2 group C member 1 isoform X2

    UniProtKB/TrEMBL
    A0A093GZ62
    Conserved Domains (2) summary
    cd06952
    Location:374 → 595
    NR_LBD_TR2_like; The ligand binding domain of the orphan nuclear receptors TR4 and TR2
    cd06967
    Location:115 → 201
    NR_DBD_TR2_like; DNA-binding domain of the TR2 and TR4 (human testicular receptor 2 and 4) is composed of two C4-type zinc fingers

  3. XM_033010191.1 → XP_032866082.1  nuclear receptor subfamily 2 group C member 1 isoform X3

    UniProtKB/TrEMBL
    A0A093GZ62
    Conserved Domains (2) summary
    cd06952
    Location:327 → 548
    NR_LBD_TR2_like; The ligand binding domain of the orphan nuclear receptors TR4 and TR2
    cd06967
    Location:68 → 154
    NR_DBD_TR2_like; DNA-binding domain of the TR2 and TR4 (human testicular receptor 2 and 4) is composed of two C4-type zinc fingers
Nucleotide Protein
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