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NBR1 NBR1 autophagy cargo receptor [ Tyto alba (common barn owl) ]

Gene ID: 104355780, updated on 12-Mar-2024

Summary

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Gene symbol
NBR1
Gene description
NBR1 autophagy cargo receptor
Locus tag
N341_09961
Gene type
protein coding
RefSeq status
MODEL
Organism
Tyto alba
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Strigiformes; Tytonidae; Tyto
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
102 current T.alba_DEE_v4.0 (GCF_018691265.1) Unplaced Scaffold NW_024881274.1 (7406424..7425810)
100 previous assembly ASM68720v1 (GCF_000687205.1) Unplaced Scaffold NW_010007356.1 (170..16823)

NW_024881274.1Genomic Context describing neighboring genes Neighboring gene Rho family GTPase 2 Neighboring gene BRCA1 DNA repair associated Neighboring gene transmembrane protein 106A Neighboring gene DEAH-box helicase 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in macroautophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in phagophore assembly site IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
next to BRCA1 gene 1 protein
Names
Next to BRCA1 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tyto alba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T.alba_DEE_v4.0

Genomic

  1. NW_024881274.1 Reference T.alba_DEE_v4.0

    Range
    7406424..7425810
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032985968.2 → XP_032841859.1  next to BRCA1 gene 1 protein isoform X5

    Conserved Domains (4) summary
    cd06396
    Location:24 → 102
    PB1_NBR1; The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves ...
    cd02340
    Location:242 → 286
    ZZ_NBR1_like; Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears ...
    cd14319
    Location:963 → 1001
    UBA_NBR1; UBA domain of next to BRCA1 gene 1 protein (NBR1) and similar proteins
    cd14947
    Location:394 → 504
    NBR1_like; Functionally uncharacterized domain in neighbor of Brca1 Gene 1 and related proteins

  2. XM_032985963.2 → XP_032841854.1  next to BRCA1 gene 1 protein isoform X1

    Conserved Domains (4) summary
    cd06396
    Location:24 → 102
    PB1_NBR1; The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves ...
    cd02340
    Location:242 → 286
    ZZ_NBR1_like; Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears ...
    cd14319
    Location:973 → 1011
    UBA_NBR1; UBA domain of next to BRCA1 gene 1 protein (NBR1) and similar proteins
    cd14947
    Location:394 → 504
    NBR1_like; Functionally uncharacterized domain in neighbor of Brca1 Gene 1 and related proteins

  3. XM_032985964.2 → XP_032841855.1  next to BRCA1 gene 1 protein isoform X2

    Conserved Domains (4) summary
    cd06396
    Location:24 → 102
    PB1_NBR1; The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves ...
    cd02340
    Location:242 → 286
    ZZ_NBR1_like; Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears ...
    cd14319
    Location:972 → 1010
    UBA_NBR1; UBA domain of next to BRCA1 gene 1 protein (NBR1) and similar proteins
    cd14947
    Location:394 → 504
    NBR1_like; Functionally uncharacterized domain in neighbor of Brca1 Gene 1 and related proteins

  4. XM_032985966.2 → XP_032841857.1  next to BRCA1 gene 1 protein isoform X4

    Conserved Domains (3) summary
    cd06396
    Location:24 → 102
    PB1_NBR1; The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves ...
    cd02340
    Location:242 → 286
    ZZ_NBR1_like; Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears ...
    cd14947
    Location:394 → 504
    NBR1_like; Functionally uncharacterized domain in neighbor of Brca1 Gene 1 and related proteins

  5. XM_032985965.2 → XP_032841856.1  next to BRCA1 gene 1 protein isoform X3

    Conserved Domains (4) summary
    cd06396
    Location:24 → 102
    PB1_NBR1; The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves ...
    cd02340
    Location:242 → 286
    ZZ_NBR1_like; Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears ...
    cd14319
    Location:964 → 1002
    UBA_NBR1; UBA domain of next to BRCA1 gene 1 protein (NBR1) and similar proteins
    cd14947
    Location:394 → 504
    NBR1_like; Functionally uncharacterized domain in neighbor of Brca1 Gene 1 and related proteins
Nucleotide Protein
Heading Accession and Version

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