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USP40 ubiquitin specific peptidase 40 [ Tyto alba (common barn owl) ]

Gene ID: 104355539, updated on 12-Mar-2024

Summary

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Gene symbol
USP40
Gene description
ubiquitin specific peptidase 40
Locus tag
N341_11708
Gene type
protein coding
RefSeq status
MODEL
Organism
Tyto alba
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Strigiformes; Tytonidae; Tyto
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
33
Annotation release Status Assembly Chr Location
102 current T.alba_DEE_v4.0 (GCF_018691265.1) Unplaced Scaffold NW_024881328.1 (42269191..42310297)
100 previous assembly ASM68720v1 (GCF_000687205.1) Unplaced Scaffold NW_010019969.1 (2450..29046)

NW_024881328.1Genomic Context describing neighboring genes Neighboring gene SH3 domain binding protein 4 Neighboring gene UDP-glucuronosyltransferase 1A1 Neighboring gene anterior gradient protein 3-like Neighboring gene TRAF3 interacting protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 40
Names
Ubiquitin carboxyl-terminal hydrolase 40

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tyto alba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T.alba_DEE_v4.0

Genomic

  1. NW_024881328.1 Reference T.alba_DEE_v4.0

    Range
    42269191..42310297
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042784114.1 → XP_042640048.1  ubiquitin carboxyl-terminal hydrolase 40 isoform X1

    Conserved Domains (1) summary
    cd02659
    Location:39 → 387
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  2. XM_042784115.1 → XP_042640049.1  ubiquitin carboxyl-terminal hydrolase 40 isoform X2

    Conserved Domains (1) summary
    cd02659
    Location:39 → 387
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  3. XM_042784117.1 → XP_042640051.1  ubiquitin carboxyl-terminal hydrolase 40 isoform X4

    Conserved Domains (1) summary
    cd02659
    Location:39 → 387
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  4. XM_042784116.1 → XP_042640050.1  ubiquitin carboxyl-terminal hydrolase 40 isoform X3

    Conserved Domains (1) summary
    cd02659
    Location:39 → 387
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
Nucleotide Protein
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