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VPS50 VPS50 subunit of EARP/GARPII complex [ Leptosomus discolor (cuckoo roller) ]

Gene ID: 104351857, updated on 12-Mar-2024

Summary

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Gene symbol
VPS50
Gene description
VPS50 subunit of EARP/GARPII complex
Locus tag
N330_03072
Gene type
protein coding
RefSeq status
MODEL
Organism
Leptosomus discolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Coraciiformes; Leptosomidae; Leptosomus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
28
Annotation release Status Assembly Chr Location
100 current ASM69178v1 (GCF_000691785.1) Unplaced Scaffold NW_009845744.1 (904..75419)

NW_009845744.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009845744.1 Unplaced Scaffold Reference ASM69178v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endocytic recycling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde transport, endosome to Golgi IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of EARP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
coiled-coil domain-containing protein 132
Names
Coiled-coil domain-containing protein 132
VPS50, EARP/GARPII complex subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Leptosomus discolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69178v1

Genomic

  1. NW_009845744.1 Reference ASM69178v1

    Range
    904..75419
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009958055.1 → XP_009956357.1  coiled-coil domain-containing protein 132

    UniProtKB/TrEMBL
    A0A091P744
    Conserved Domains (2) summary
    pfam10474
    Location:803 → 1034
    DUF2451; Protein of unknown function C-terminus (DUF2451)
    pfam10475
    Location:130 → 421
    DUF2450; Protein of unknown function N-terminal domain (DUF2450)
Nucleotide Protein
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