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LSM6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated [ Opisthocomus hoazin ]

Gene ID: 104337007, updated on 12-Mar-2024

Summary

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Gene symbol
LSM6
Gene description
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated
Locus tag
N306_02019
Gene type
protein coding
RefSeq status
MODEL
Organism
Opisthocomus hoazin
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Opisthocomiformes; Opisthocomidae; Opisthocomus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current ASM69207v1 (GCF_000692075.1) Unplaced Scaffold NW_009903385.1 (858396..863926)

NW_009903385.1Genomic Context describing neighboring genes Neighboring gene metabolism of cobalamin associated A Neighboring gene zinc finger protein 827 Neighboring gene solute carrier family 10 member 7 Neighboring gene POU class 4 homeobox 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009903385.1 Unplaced Scaffold Reference ASM69207v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in maturation of SSU-rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U6 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sno(s)RNA-containing ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U6 snRNA-associated Sm-like protein LSm6
Names
U6 snRNA-associated Sm-like LSm6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Opisthocomus hoazin Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69207v1

Genomic

  1. NW_009903385.1 Reference ASM69207v1

    Range
    858396..863926
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009942881.1 → XP_009941183.1  U6 snRNA-associated Sm-like protein LSm6

    Conserved Domains (1) summary
    cd01726
    Location:22 → 89
    LSm6; Like-Sm protein 6
Nucleotide Protein
Heading Accession and Version

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