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COL21A1 collagen type XXI alpha 1 chain [ Opisthocomus hoazin ]

Gene ID: 104336498, updated on 12-Mar-2024

Summary

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Gene symbol
COL21A1
Gene description
collagen type XXI alpha 1 chain
Gene type
protein coding
RefSeq status
MODEL
Organism
Opisthocomus hoazin
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Opisthocomiformes; Opisthocomidae; Opisthocomus
Orthologs
human all
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Genomic context

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See COL21A1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
100 current ASM69207v1 (GCF_000692075.1) Unplaced Scaffold NW_009903287.1 (1285861..1372370, complement)

NW_009903287.1Genomic Context describing neighboring genes Neighboring gene 3-hydroxy-3-methylglutaryl-CoA lyase like 1 Neighboring gene bone morphogenetic protein 5 Neighboring gene dystonin Neighboring gene BEN domain containing 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009903287.1 Unplaced Scaffold Reference ASM69207v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
LOW QUALITY PROTEIN: collagen alpha-1(XXI) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Opisthocomus hoazin Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69207v1

Genomic

  1. NW_009903287.1 Reference ASM69207v1

    Range
    1285861..1372370 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009942340.1 → XP_009940642.1  LOW QUALITY PROTEIN: collagen alpha-1(XXI) chain

    Conserved Domains (4) summary
    pfam01391
    Location:569 → 628
    Collagen; Collagen triple helix repeat (20 copies)
    COG2304
    Location:6 → 192
    YfbK; Secreted protein containing bacterial Ig-like domain and vWFA domain [General function prediction only]
    cl00057
    Location:34 → 215
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    cl22861
    Location:255 → 412
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
Nucleotide Protein
Heading Accession and Version

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