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PDLIM3 PDZ and LIM domain 3 [ Opisthocomus hoazin ]

Gene ID: 104334548, updated on 12-Mar-2024

Summary

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Gene symbol
PDLIM3
Gene description
PDZ and LIM domain 3
Locus tag
N306_04690
Gene type
protein coding
RefSeq status
MODEL
Organism
Opisthocomus hoazin
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Opisthocomiformes; Opisthocomidae; Opisthocomus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current ASM69207v1 (GCF_000692075.1) Unplaced Scaffold NW_009902632.1 (1484272..1501323)

NW_009902632.1Genomic Context describing neighboring genes Neighboring gene toll like receptor 3 Neighboring gene sorbin and SH3 domain containing 2 Neighboring gene cilia and flagella associated protein 96 Neighboring gene UFM1 specific peptidase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009902632.1 Unplaced Scaffold Reference ASM69207v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables muscle alpha-actinin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in muscle structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of filamentous actin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PDZ and LIM domain protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Opisthocomus hoazin Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69207v1

Genomic

  1. NW_009902632.1 Reference ASM69207v1

    Range
    1484272..1501323
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009940198.1 → XP_009938500.1  PDZ and LIM domain protein 3

    UniProtKB/TrEMBL
    A0A091WJ40
    Conserved Domains (2) summary
    cd09450
    Location:234 → 286
    LIM_ALP; This family represents the LIM domain of ALP, actinin-associated LIM protein
    pfam15936
    Location:125 → 205
    DUF4749; Domain of unknown function (DUF4749)
Nucleotide Protein
Heading Accession and Version

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