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SNRNP40 small nuclear ribonucleoprotein U5 subunit 40 [ Haliaeetus albicilla (white-tailed eagle) ]

Gene ID: 104318512, updated on 12-Mar-2024

Summary

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Gene symbol
SNRNP40
Gene description
small nuclear ribonucleoprotein U5 subunit 40
Locus tag
N329_05748
Gene type
protein coding
RefSeq status
MODEL
Organism
Haliaeetus albicilla
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Accipitriformes; Accipitridae; Accipitrinae; Haliaeetus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current ASM69140v1 (GCF_000691405.1) Unplaced Scaffold NW_009773460.1 (446..10089)

NW_009773460.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009773460.1 Unplaced Scaffold Reference ASM69140v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U5 small nuclear ribonucleoprotein 40 kDa protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Haliaeetus albicilla Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69140v1

Genomic

  1. NW_009773460.1 Reference ASM69140v1

    Range
    446..10089
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009919789.1 → XP_009918091.1  U5 small nuclear ribonucleoprotein 40 kDa protein

    UniProtKB/TrEMBL
    A0A091P9Z8
    Conserved Domains (3) summary
    COG2319
    Location:23 → 288
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:32 → 283
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:44 → 80
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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