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HNF4A hepatocyte nuclear factor 4 alpha [ Dryobates pubescens (Downy woodpecker) ]

Gene ID: 104307542, updated on 3-Apr-2024

Summary

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Gene symbol
HNF4A
Gene description
hepatocyte nuclear factor 4 alpha
Locus tag
N307_07029
See related
EnsemblRapid:ENSPPUG00010002345
Gene type
protein coding
RefSeq status
MODEL
Organism
Dryobates pubescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Piciformes; Picidae; Dryobates
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 26
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_03 current bDryPub1.pri (GCF_014839835.1) 26 NC_071637.1 (4220628..4239951, complement)
100 previous assembly ASM69900v1 (GCF_000699005.1) Unplaced Scaffold NW_009666214.1 (65403..82561, complement)

Chromosome 26 - NC_071637.1Genomic Context describing neighboring genes Neighboring gene serine incorporator 3 Neighboring gene alpha tocopherol transfer protein like Neighboring gene R3H domain containing like Neighboring gene fat storage inducing transmembrane protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hepatocyte nuclear factor 4-alpha
Names
Hepatocyte nuclear factor 4-alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_014839835.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bDryPub1.pri

Genomic

  1. NC_071637.1 Reference bDryPub1.pri

    Range
    4220628..4239951 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009908613.2 → XP_009906915.1  hepatocyte nuclear factor 4-alpha isoform X2

    UniProtKB/TrEMBL
    A0A093H8B5
    Related
    ENSPPUP00010002345.1, ENSPPUT00010003562.1
    Conserved Domains (2) summary
    cd06931
    Location:151 → 373
    NR_LBD_HNF4_like; The ligand binding domain of heptocyte nuclear factor 4, which is explosively expanded in nematodes
    cd06960
    Location:60 → 135
    NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers

  2. XM_054173690.1 → XP_054029665.1  hepatocyte nuclear factor 4-alpha isoform X1

Nucleotide Protein
Heading Accession and Version

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