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VPS50 VPS50 subunit of EARP/GARPII complex [ Dryobates pubescens (Downy woodpecker) ]

Gene ID: 104306467, updated on 12-Mar-2024

Summary

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Gene symbol
VPS50
Gene description
VPS50 subunit of EARP/GARPII complex
Locus tag
N307_08886
See related
EnsemblRapid:ENSPPUG00010005047
Gene type
protein coding
RefSeq status
MODEL
Organism
Dryobates pubescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Piciformes; Picidae; Dryobates
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
29
Annotation release Status Assembly Chr Location
RS_2023_03 current bDryPub1.pri (GCF_014839835.1) 4 NC_071615.1 (33665965..33715488)
100 previous assembly ASM69900v1 (GCF_000699005.1) Unplaced Scaffold NW_009661765.1 (167229..217765)

Chromosome 4 - NC_071615.1Genomic Context describing neighboring genes Neighboring gene cyclin dependent kinase 6 Neighboring gene HEPACAM family member 2 Neighboring gene calcitonin receptor Neighboring gene tissue factor pathway inhibitor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endocytic recycling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde transport, endosome to Golgi IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of EARP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndetin
Names
Coiled-coil domain-containing protein 132
VPS50, EARP/GARPII complex subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_014839835.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bDryPub1.pri

Genomic

  1. NC_071615.1 Reference bDryPub1.pri

    Range
    33665965..33715488
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054161080.1 → XP_054017055.1  syndetin isoform X1

    Related
    ENSPPUP00010005232.1, ENSPPUT00010008080.1

  2. XM_009907435.2 → XP_009905737.2  syndetin isoform X2

    Related
    ENSPPUP00010005243.1, ENSPPUT00010008100.1
Nucleotide Protein
Heading Accession and Version

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