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NIPBL NIPBL cohesin loading factor [ Charadrius vociferus (killdeer) ]

Gene ID: 104294982, updated on 12-Mar-2024

Summary

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Gene symbol
NIPBL
Gene description
NIPBL cohesin loading factor
Locus tag
N301_10883
Gene type
protein coding
RefSeq status
MODEL
Organism
Charadrius vociferus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Charadriidae; Charadrius
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
47
Annotation release Status Assembly Chr Location
100 current ASM70802v2 (GCF_000708025.1) Unplaced Scaffold NW_009646931.1 (2336588..2438095, complement)

NW_009646931.1Genomic Context describing neighboring genes Neighboring gene nucleoporin 155 Neighboring gene ciliogenesis and planar polarity effector complex subunit 1 Neighboring gene solute carrier family 1 member 3 Neighboring gene RAN binding protein 3 like Neighboring gene NAD kinase 2, mitochondrial

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009646931.1 Unplaced Scaffold Reference ASM70802v2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in digestive tract development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in embryonic viscerocranium morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in establishment of mitotic sister chromatid cohesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in establishment of protein localization to chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic cohesin loading IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in replication-born double-strand break repair via sister chromatid exchange IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Scc2-Scc4 cohesin loading complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: nipped-B-like protein
Names
Nipped-B-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Charadrius vociferus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70802v2

Genomic

  1. NW_009646931.1 Reference ASM70802v2

    Range
    2336588..2438095 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009894678.1 → XP_009892980.1  LOW QUALITY PROTEIN: nipped-B-like protein

    Conserved Domains (4) summary
    pfam08619
    Location:704 → 911
    Nha1_C; Alkali metal cation/H+ antiporter Nha1 C terminus
    pfam12765
    Location:1771 → 1812
    Cohesin_HEAT; HEAT repeat associated with sister chromatid cohesion
    pfam12830
    Location:2257 → 2431
    Nipped-B_C; Sister chromatid cohesion C-terminus
    sd00044
    Location:1788 → 1816
    HEAT; HEAT repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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