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CLPB ClpB family mitochondrial disaggregase [ Charadrius vociferus (killdeer) ]

Gene ID: 104294487, updated on 12-Mar-2024

Summary

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Gene symbol
CLPB
Gene description
ClpB family mitochondrial disaggregase
Locus tag
N301_01116
Gene type
protein coding
RefSeq status
MODEL
Organism
Charadrius vociferus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Charadriidae; Charadrius
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current ASM70802v2 (GCF_000708025.1) Unplaced Scaffold NW_009646351.1 (9650..113356)

NW_009646351.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009646351.1 Unplaced Scaffold Reference ASM70802v2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to heat IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: caseinolytic peptidase B protein homolog
Names
Caseinolytic peptidase B protein
ClpB homolog, mitochondrial AAA ATPase chaperonin
caseinolytic mitochondrial matrix peptidase chaperone subunit B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Charadrius vociferus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70802v2

Genomic

  1. NW_009646351.1 Reference ASM70802v2

    Range
    9650..113356
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009894103.1 → XP_009892405.1  LOW QUALITY PROTEIN: caseinolytic peptidase B protein homolog

    Conserved Domains (5) summary
    COG0542
    Location:211 → 440
    ClpA; ATP-dependent Clp protease ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones]
    cd00204
    Location:63 → 187
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam07724
    Location:230 → 410
    AAA_2; AAA domain (Cdc48 subfamily)
    pfam13857
    Location:125 → 178
    Ank_5; Ankyrin repeats (many copies)
    sd00045
    Location:68 → 99
    ANK; ANK repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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