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SPRTN SprT-like N-terminal domain [ Charadrius vociferus (killdeer) ]

Gene ID: 104291865, updated on 12-Mar-2024

Summary

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Gene symbol
SPRTN
Gene description
SprT-like N-terminal domain
Locus tag
N301_15217
Gene type
protein coding
RefSeq status
MODEL
Organism
Charadrius vociferus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Charadriidae; Charadrius
Orthologs
human mouse all
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Genomic context

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See SPRTN in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current ASM70802v2 (GCF_000708025.1) Unplaced Scaffold NW_009649927.1 (1007698..1011636)

NW_009649927.1Genomic Context describing neighboring genes Neighboring gene ras homolog family member U Neighboring gene exocyst complex component 8 Neighboring gene uncharacterized LOC104291849 Neighboring gene translin associated factor X

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009649927.1 Unplaced Scaffold Reference ASM70802v2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sprT-like domain-containing protein Spartan
Names
SprT-like domain-containing protein Spartan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Charadrius vociferus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70802v2

Genomic

  1. NW_009649927.1 Reference ASM70802v2

    Range
    1007698..1011636
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009891160.1 → XP_009889462.1  sprT-like domain-containing protein Spartan

    UniProtKB/TrEMBL
    A0A0A0AUA3
    Conserved Domains (2) summary
    smart00734
    Location:386 → 409
    ZnF_Rad18; Rad18-like CCHC zinc finger
    pfam10263
    Location:4 → 143
    SprT-like; SprT-like family
Nucleotide Protein
Heading Accession and Version

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