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PRDM10 PR/SET domain 10 [ Charadrius vociferus (killdeer) ]

Gene ID: 104291552, updated on 12-Mar-2024

Summary

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Gene symbol
PRDM10
Gene description
PR/SET domain 10
Locus tag
N301_15865
Gene type
protein coding
RefSeq status
MODEL
Organism
Charadrius vociferus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Charadriidae; Charadrius
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
100 current ASM70802v2 (GCF_000708025.1) Unplaced Scaffold NW_009649724.1 (2570498..2604883, complement)

NW_009649724.1Genomic Context describing neighboring genes Neighboring gene ST14 transmembrane serine protease matriptase Neighboring gene nuclear factor related to kappaB binding protein Neighboring gene amyloid beta precursor like protein 2 Neighboring gene transmembrane protein 45B-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009649724.1 Unplaced Scaffold Reference ASM70802v2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PR domain zinc finger protein 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Charadrius vociferus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70802v2

Genomic

  1. NW_009649724.1 Reference ASM70802v2

    Range
    2570498..2604883 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009890799.1 → XP_009889101.1  PR domain zinc finger protein 10 isoform X1

    UniProtKB/TrEMBL
    A0A0A0AWM9
    Conserved Domains (5) summary
    COG5048
    Location:552 → 685
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:611 → 631
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:637 → 659
    zf-C2H2; Zinc finger, C2H2 type
    pfam00856
    Location:222 → 327
    SET; SET domain
    pfam16638
    Location:407 → 507
    Tristanin_u2; Unstructured region on methyltransferase between zinc-fingers

  2. XM_009890800.1 → XP_009889102.1  PR domain zinc finger protein 10 isoform X2

    UniProtKB/TrEMBL
    A0A0A0AWM9
    Conserved Domains (5) summary
    COG5048
    Location:548 → 681
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:607 → 627
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:633 → 655
    zf-C2H2; Zinc finger, C2H2 type
    pfam00856
    Location:214 → 319
    SET; SET domain
    pfam16638
    Location:399 → 499
    Tristanin_u2; Unstructured region on methyltransferase between zinc-fingers
Nucleotide Protein
Heading Accession and Version

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