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FDXACB1 ferredoxin-fold anticodon binding domain containing 1 [ Charadrius vociferus (killdeer) ]

Gene ID: 104284179, updated on 12-Mar-2024

Summary

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Gene symbol
FDXACB1
Gene description
ferredoxin-fold anticodon binding domain containing 1
Locus tag
N301_02252
Gene type
protein coding
RefSeq status
MODEL
Organism
Charadrius vociferus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Charadriidae; Charadrius
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See FDXACB1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current ASM70802v2 (GCF_000708025.1) Unplaced Scaffold NW_009647827.1 (136579..139861, complement)

NW_009647827.1Genomic Context describing neighboring genes Neighboring gene salt inducible kinase 2 Neighboring gene ALG9 alpha-1,2-mannosyltransferase Neighboring gene crystallin alpha B Neighboring gene heat shock protein family B (small) member 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009647827.1 Unplaced Scaffold Reference ASM70802v2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables rRNA (uridine-N3-)-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in rRNA base methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ferredoxin-fold anticodon-binding domain-containing protein 1
Names
Ferredoxin-fold anticodon-binding domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Charadrius vociferus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70802v2

Genomic

  1. NW_009647827.1 Reference ASM70802v2

    Range
    136579..139861 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009882470.1 → XP_009880772.1  ferredoxin-fold anticodon-binding domain-containing protein 1

    UniProtKB/TrEMBL
    A0A0A0AAS5
    Conserved Domains (3) summary
    pfam10354
    Location:26 → 143
    DUF2431; Domain of unknown function (DUF2431)
    cl00268
    Location:421 → 483
    class_II_aaRS-like_core; Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches ...
    cl08386
    Location:495 → 549
    FDX-ACB; Ferredoxin-fold anticodon binding domain
Nucleotide Protein
Heading Accession and Version

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