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LIMS2 LIM zinc finger domain containing 2 [ Charadrius vociferus (killdeer) ]

Gene ID: 104282271, updated on 12-Mar-2024

Summary

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Gene symbol
LIMS2
Gene description
LIM zinc finger domain containing 2
Locus tag
N301_06729
Gene type
protein coding
RefSeq status
MODEL
Organism
Charadrius vociferus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Charadriidae; Charadrius
Orthologs
human mouse all
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Genomic context

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See LIMS2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current ASM70802v2 (GCF_000708025.1) Unplaced Scaffold NW_009646411.1 (86661..110475, complement)

NW_009646411.1Genomic Context describing neighboring genes Neighboring gene interacts with SUPT6H, CTD assembly factor 1 Neighboring gene myosin VIIB Neighboring gene G protein-coupled receptor 17 Neighboring gene WD repeat domain 33 Neighboring gene RNA polymerase II subunit D

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009646411.1 Unplaced Scaffold Reference ASM70802v2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of substrate adhesion-dependent cell spreading IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LIM and senescent cell antigen-like-containing domain protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Charadrius vociferus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70802v2

Genomic

  1. NW_009646411.1 Reference ASM70802v2

    Range
    86661..110475 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009880356.1 → XP_009878658.1  LIM and senescent cell antigen-like-containing domain protein 2

    See identical proteins and their annotated locations for XP_009878658.1

    UniProtKB/TrEMBL
    A0A099ZV25
    Conserved Domains (5) summary
    cd09331
    Location:37 → 95
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:98 → 149
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:162 → 212
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:218 → 271
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:279 → 332
    LIM5_PINCH; The fifth LIM domain of protein PINCH
Nucleotide Protein
Heading Accession and Version

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