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COL6A3 collagen type VI alpha 3 chain [ Apaloderma vittatum (bar-tailed trogon) ]

Gene ID: 104278177, updated on 12-Mar-2024

Summary

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Gene symbol
COL6A3
Gene description
collagen type VI alpha 3 chain
Gene type
protein coding
RefSeq status
MODEL
Organism
Apaloderma vittatum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Trogoniformes; Trogonidae; Apaloderma
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
43
Annotation release Status Assembly Chr Location
100 current ASM70340v1 (GCF_000703405.1) Unplaced Scaffold NW_009731146.1 (37843..90427, complement)

NW_009731146.1Genomic Context describing neighboring genes Neighboring gene melanophilin Neighboring gene RAB17, member RAS oncogene family

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009731146.1 Unplaced Scaffold Reference ASM70340v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-3(VI) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apaloderma vittatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70340v1

Genomic

  1. NW_009731146.1 Reference ASM70340v1

    Range
    37843..90427 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009875077.1 → XP_009873379.1  collagen alpha-3(VI) chain

    Conserved Domains (8) summary
    pfam01391
    Location:2320 → 2378
    Collagen; Collagen triple helix repeat (20 copies)
    smart00327
    Location:1840 → 2008
    VWA; von Willebrand factor (vWF) type A domain
    cd00063
    Location:2978 → 3046
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd01481
    Location:1440 → 1604
    vWA_collagen_alpha3-VI-like; VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...
    cd01482
    Location:37 → 202
    vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
    pfam00014
    Location:3090 → 3142
    Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
    pfam00092
    Location:1641 → 1813
    VWA; von Willebrand factor type A domain
    cl00057
    Location:841 → 1004
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
Nucleotide Protein
Heading Accession and Version

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