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LUM lumican [ Apaloderma vittatum (bar-tailed trogon) ]

Gene ID: 104272090, updated on 12-Mar-2024

Summary

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Gene symbol
LUM
Gene description
lumican
Locus tag
N311_03559
Gene type
protein coding
RefSeq status
MODEL
Organism
Apaloderma vittatum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Trogoniformes; Trogonidae; Apaloderma
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current ASM70340v1 (GCF_000703405.1) Unplaced Scaffold NW_009709625.1 (77776..82000)

NW_009709625.1Genomic Context describing neighboring genes Neighboring gene decorin

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009709625.1 Unplaced Scaffold Reference ASM70340v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lumican

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apaloderma vittatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70340v1

Genomic

  1. NW_009709625.1 Reference ASM70340v1

    Range
    77776..82000
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009866989.1 → XP_009865291.1  lumican

    See identical proteins and their annotated locations for XP_009865291.1

    UniProtKB/TrEMBL
    A0A091P4J6
    Conserved Domains (4) summary
    smart00013
    Location:40 → 74
    LRRNT; Leucine rich repeat N-terminal domain
    cd00116
    Location:69 → 292
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:71 → 94
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:140 → 201
    LRR_8; Leucine rich repeat
Nucleotide Protein
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