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SEPSECS Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase [ Gavia stellata (red-throated loon) ]

Gene ID: 104260484, updated on 12-Mar-2024

Summary

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Gene symbol
SEPSECS
Gene description
Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase
Locus tag
N328_11897
Gene type
protein coding
RefSeq status
MODEL
Organism
Gavia stellata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gaviiformes; Gaviidae; Gavia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_09 current bGavSte3.hap2 (GCF_030936135.1) 5 NC_082598.1 (20702683..20728989, complement)
100 previous assembly ASM69087v1 (GCF_000690875.1) Unplaced Scaffold NW_009317062.1 (26868..49557, complement)

Chromosome 5 - NC_082598.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 149 Neighboring gene leucine rich repeat LGI family member 2 Neighboring gene phosphatidylinositol 4-kinase type 2 beta Neighboring gene zinc finger CCHC-type containing 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables O-phosphoseryl-tRNA(Sec) selenium transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in conversion of seryl-tRNAsec to selenocys-tRNAsec IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in selenocysteine incorporation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
O-phosphoseryl-tRNA(Sec) selenium transferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030936135.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGavSte3.hap2

Genomic

  1. NC_082598.1 Reference bGavSte3.hap2

    Range
    20702683..20728989 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059817716.1 → XP_059673699.1  O-phosphoseryl-tRNA(Sec) selenium transferase

Nucleotide Protein
Heading Accession and Version

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