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PBX1 PBX homeobox 1 [ Gavia stellata (red-throated loon) ]

Gene ID: 104257200, updated on 12-Mar-2024

Summary

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Gene symbol
PBX1
Gene description
PBX homeobox 1
Locus tag
N328_00809
Gene type
protein coding
RefSeq status
MODEL
Organism
Gavia stellata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gaviiformes; Gaviidae; Gavia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_09 current bGavSte3.hap2 (GCF_030936135.1) 10 NC_082603.1 (7132139..7267671)
100 previous assembly ASM69087v1 (GCF_000690875.1) Unplaced Scaffold NW_009303742.1 (2705..20598)

Chromosome 10 - NC_082603.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 52 Neighboring gene NUF2 component of NDC80 kinetochore complex Neighboring gene LIM homeobox transcription factor 1 alpha Neighboring gene retinoid X receptor gamma

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in animal organ morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in embryonic organ development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in eye development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-B-cell leukemia transcription factor 1
Names
Pre-B-cell leukemia transcription factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030936135.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGavSte3.hap2

Genomic

  1. NC_082603.1 Reference bGavSte3.hap2

    Range
    7132139..7267671
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059821805.1 → XP_059677788.1  pre-B-cell leukemia transcription factor 1 isoform X1

  2. XM_059821806.1 → XP_059677789.1  pre-B-cell leukemia transcription factor 1 isoform X2

  3. XM_059821807.1 → XP_059677790.1  pre-B-cell leukemia transcription factor 1 isoform X3

Nucleotide Protein
Heading Accession and Version

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