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PRPF39 pre-mRNA processing factor 39 [ Gavia stellata (red-throated loon) ]

Gene ID: 104256986, updated on 12-Mar-2024

Summary

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Gene symbol
PRPF39
Gene description
pre-mRNA processing factor 39
Locus tag
N328_09718
Gene type
protein coding
RefSeq status
MODEL
Organism
Gavia stellata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gaviiformes; Gaviidae; Gavia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_09 current bGavSte3.hap2 (GCF_030936135.1) 7 NC_082600.1 (1586179..1603058)
100 previous assembly ASM69087v1 (GCF_000690875.1) Unplaced Scaffold NW_009302842.1 (2814..15993)

Chromosome 7 - NC_082600.1Genomic Context describing neighboring genes Neighboring gene kelch like family member 28 Neighboring gene TOG array regulator of axonemal microtubules 1 Neighboring gene small nucleolar RNA SNORD127 Neighboring gene heme-binding protein 2 Neighboring gene FKBP prolyl isomerase 3 Neighboring gene FA complementation group M

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA 5'-splice site recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of commitment complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-processing factor 39
Names
Pre-mRNA-processing factor 39

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030936135.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGavSte3.hap2

Genomic

  1. NC_082600.1 Reference bGavSte3.hap2

    Range
    1586179..1603058
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059819293.1 → XP_059675276.1  pre-mRNA-processing factor 39 isoform X1

  2. XM_059819294.1 → XP_059675277.1  pre-mRNA-processing factor 39 isoform X2

  3. XM_059819295.1 → XP_059675278.1  pre-mRNA-processing factor 39 isoform X3

  4. XM_059819296.1 → XP_059675279.1  pre-mRNA-processing factor 39 isoform X3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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