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PLAG1 PLAG1 zinc finger [ Gavia stellata (red-throated loon) ]

Gene ID: 104255420, updated on 12-Mar-2024

Summary

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Gene symbol
PLAG1
Gene description
PLAG1 zinc finger
Locus tag
N328_02336
Gene type
protein coding
RefSeq status
MODEL
Organism
Gavia stellata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gaviiformes; Gaviidae; Gavia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_09 current bGavSte3.hap2 (GCF_030936135.1) 3 NC_082596.1 (42986237..42992336)
100 previous assembly ASM69087v1 (GCF_000690875.1) Unplaced Scaffold NW_009296316.1 (1204..4104)

Chromosome 3 - NC_082596.1Genomic Context describing neighboring genes Neighboring gene short chain dehydrogenase/reductase family 16C member 5 Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 7 Neighboring gene MOS proto-oncogene, serine/threonine kinase Neighboring gene small nucleolar RNA U54 Neighboring gene ribosomal protein S20

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone deacetylase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein PLAG1
Names
Zinc finger protein PLAG1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030936135.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGavSte3.hap2

Genomic

  1. NC_082596.1 Reference bGavSte3.hap2

    Range
    42986237..42992336
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059815593.1 → XP_059671576.1  zinc finger protein PLAG1 isoform X2

  2. XM_009809486.2 → XP_009807788.1  zinc finger protein PLAG1 isoform X1

    See identical proteins and their annotated locations for XP_009807788.1

    UniProtKB/TrEMBL
    A0A093FC20
    Conserved Domains (3) summary
    COG5189
    Location:58 → 139
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:36 → 56
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:79 → 103
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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