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PICALM phosphatidylinositol binding clathrin assembly protein [ Gavia stellata (red-throated loon) ]

Gene ID: 104253697, updated on 12-Mar-2024

Summary

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Gene symbol
PICALM
Gene description
phosphatidylinositol binding clathrin assembly protein
Locus tag
N328_06150
Gene type
protein coding
RefSeq status
MODEL
Organism
Gavia stellata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gaviiformes; Gaviidae; Gavia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2023_09 current bGavSte3.hap2 (GCF_030936135.1) 1 NC_082594.1 (6993110..7064840)
100 previous assembly ASM69087v1 (GCF_000690875.1) Unplaced Scaffold NW_009289164.1 (26840..67769, complement)

Chromosome 1 - NC_082594.1Genomic Context describing neighboring genes Neighboring gene heat shock protein nuclear import factor hikeshi Neighboring gene embryonic ectoderm development Neighboring gene coiled-coil domain containing 83 Neighboring gene synaptotagmin like 2 Neighboring gene coiled-coil domain containing 89

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables clathrin heavy chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in clathrin coat assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in clathrin-dependent endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle budding from presynaptic endocytic zone membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in clathrin-coated pit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in clathrin-coated vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extrinsic component of presynaptic endocytic zone membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylinositol-binding clathrin assembly protein
Names
Phosphatidylinositol-binding clathrin assembly protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030936135.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGavSte3.hap2

Genomic

  1. NC_082594.1 Reference bGavSte3.hap2

    Range
    6993110..7064840
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059826018.1 → XP_059682001.1  phosphatidylinositol-binding clathrin assembly protein isoform X1

  2. XM_059826023.1 → XP_059682006.1  phosphatidylinositol-binding clathrin assembly protein isoform X2

  3. XM_059826032.1 → XP_059682015.1  phosphatidylinositol-binding clathrin assembly protein isoform X3

  4. XM_059826040.1 → XP_059682023.1  phosphatidylinositol-binding clathrin assembly protein isoform X4

Nucleotide Protein
Heading Accession and Version

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