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RAD50 RAD50 double strand break repair protein [ Gavia stellata (red-throated loon) ]

Gene ID: 104250574, updated on 12-Mar-2024

Summary

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Gene symbol
RAD50
Gene description
RAD50 double strand break repair protein
Locus tag
N328_03180
Gene type
protein coding
RefSeq status
MODEL
Organism
Gavia stellata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gaviiformes; Gaviidae; Gavia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 16
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2023_09 current bGavSte3.hap2 (GCF_030936135.1) 16 NC_082609.1 (2070126..2092017, complement)
100 previous assembly ASM69087v1 (GCF_000690875.1) Unplaced Scaffold NW_009317476.1 (1508..23148, complement)

Chromosome 16 - NC_082609.1Genomic Context describing neighboring genes Neighboring gene kinesin family member 3A Neighboring gene interleukin 4 Neighboring gene uncharacterized LOC104262856 Neighboring gene interferon regulatory factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables G-quadruplex DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA duplex unwinding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chromosome organization involved in meiotic cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in double-strand break repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in telomere maintenance via recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in telomere maintenance via telomerase IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Mre11 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in condensed nuclear chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA repair protein RAD50

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030936135.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGavSte3.hap2

Genomic

  1. NC_082609.1 Reference bGavSte3.hap2

    Range
    2070126..2092017 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009816403.2 → XP_009814705.1  DNA repair protein RAD50

    See identical proteins and their annotated locations for XP_009814705.1

    Conserved Domains (4) summary
    TIGR00606
    Location:2 → 1312
    rad50; rad50
    cd03240
    Location:1148 → 1297
    ABC_Rad50; ATP-binding cassette domain of Rad50
    pfam04423
    Location:659 → 709
    Rad50_zn_hook; Rad50 zinc hook motif
    cl19219
    Location:982 → 1074
    DUF342; Protein of unknown function (DUF342)
Nucleotide Protein
Heading Accession and Version

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