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SQSTM1 sequestosome 1 [ Cariama cristata (Red-legged seriema) ]

Gene ID: 104169211, updated on 12-Mar-2024

Summary

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Gene symbol
SQSTM1
Gene description
sequestosome 1
Locus tag
N322_09467
Gene type
protein coding
RefSeq status
MODEL
Organism
Cariama cristata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Cariamiformes; Cariamidae; Cariama
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current ASM69053v1 (GCF_000690535.1) Unplaced Scaffold NW_009600547.1 (4094..8280, complement)

NW_009600547.1Genomic Context describing neighboring genes Neighboring gene MRN complex interacting protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009600547.1 Unplaced Scaffold Reference ASM69053v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables K63-linked polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase C binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in aggrephagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in aggresome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in amphisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sequestosome-1
Names
Sequestosome-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cariama cristata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69053v1

Genomic

  1. NW_009600547.1 Reference ASM69053v1

    Range
    4094..8280 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009710055.1 → XP_009708357.1  sequestosome-1 isoform X2

    UniProtKB/TrEMBL
    A0A091LUH6
    Conserved Domains (2) summary
    cd02340
    Location:42 → 84
    ZZ_NBR1_like; Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears ...
    cl21463
    Location:287 → 346
    UBA_like_SF; UBA domain-like superfamily

  2. XM_009710054.1 → XP_009708356.1  sequestosome-1 isoform X1

    UniProtKB/TrEMBL
    A0A091LUH6
    Conserved Domains (2) summary
    cd02340
    Location:42 → 84
    ZZ_NBR1_like; Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears ...
    cl21463
    Location:317 → 376
    UBA_like_SF; UBA domain-like superfamily

  3. XM_009710056.1 → XP_009708358.1  sequestosome-1 isoform X3

    Conserved Domains (2) summary
    cd02340
    Location:42 → 84
    ZZ_NBR1_like; Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears ...
    cl21463
    Location:255 → 304
    UBA_like_SF; UBA domain-like superfamily
Nucleotide Protein
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