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PDX1 pancreatic and duodenal homeobox 1 [ Struthio camelus australis ]

Gene ID: 104151646, updated on 12-Mar-2024

Summary

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Gene symbol
PDX1
Gene description
pancreatic and duodenal homeobox 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Struthio camelus australis (sub-species: australis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Struthioniformes; Struthionidae; Struthio
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See PDX1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current ASM69896v1 (GCF_000698965.1) Unplaced Scaffold NW_009272086.1 (4950916..4969351, complement)

NW_009272086.1Genomic Context describing neighboring genes Neighboring gene fms related receptor tyrosine kinase 1 Neighboring gene poly(A) specific ribonuclease subunit PAN3 Neighboring gene fms related receptor tyrosine kinase 3 Neighboring gene GS homeobox 1 Neighboring gene uncharacterized LOC104151589

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009272086.1 Unplaced Scaffold Reference ASM69896v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in type B pancreatic cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pancreas/duodenum homeobox protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Struthio camelus australis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69896v1 Primary Assembly

Genomic

  1. NW_009272086.1 Reference ASM69896v1 Primary Assembly

    Range
    4950916..4969351 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009686613.1 → XP_009684908.1  pancreas/duodenum homeobox protein 1

    Conserved Domains (1) summary
    pfam00046
    Location:21 → 74
    Homeobox; Homeobox domain
Nucleotide Protein
Heading Accession and Version

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