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TNRC6B trinucleotide repeat containing adaptor 6B [ Struthio camelus australis ]

Gene ID: 104137888, updated on 12-Mar-2024

Summary

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Gene symbol
TNRC6B
Gene description
trinucleotide repeat containing adaptor 6B
Locus tag
N308_03302
See related
Ensembl:ENSSCUG00000000852
Gene type
protein coding
RefSeq status
MODEL
Organism
Struthio camelus australis (sub-species: australis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Struthioniformes; Struthionidae; Struthio
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
100 current ASM69896v1 (GCF_000698965.1) Unplaced Scaffold NW_009270488.1 (1558470..1607750)

NW_009270488.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 83 member F Neighboring gene uncharacterized LOC104137887 Neighboring gene adenylosuccinate lyase Neighboring gene small G protein signaling modulator 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009270488.1 Unplaced Scaffold Reference ASM69896v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in miRNA-mediated post-transcriptional gene silencing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trinucleotide repeat-containing gene 6B protein
Names
Trinucleotide repeat-containing gene 6B protein
trinucleotide repeat containing 6B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Struthio camelus australis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69896v1 Primary Assembly

Genomic

  1. NW_009270488.1 Reference ASM69896v1 Primary Assembly

    Range
    1558470..1607750
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009665247.1 → XP_009663542.1  trinucleotide repeat-containing gene 6B protein isoform X1

    UniProtKB/TrEMBL
    A0A093JA01
    Related
    ENSSCUP00000001044.1, ENSSCUT00000001461.1
    Conserved Domains (4) summary
    pfam10427
    Location:927 → 1044
    Ago_hook; Argonaute hook
    pfam12938
    Location:1148 → 1257
    M_domain; M domain of GW182
    pfam16608
    Location:1361 → 1625
    TNRC6-PABC_bdg; TNRC6-PABC binding domain
    cl17169
    Location:1627 → 1709
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_009665248.1 → XP_009663543.1  trinucleotide repeat-containing gene 6B protein isoform X2

    UniProtKB/TrEMBL
    A0A093JA01
    Conserved Domains (4) summary
    pfam10427
    Location:927 → 1044
    Ago_hook; Argonaute hook
    pfam12938
    Location:1105 → 1200
    M_domain; M domain of GW182
    pfam16608
    Location:1304 → 1583
    TNRC6-PABC_bdg; TNRC6-PABC binding domain
    cl17169
    Location:1585 → 1667
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. XM_009665249.1 → XP_009663544.1  trinucleotide repeat-containing gene 6B protein isoform X3

    UniProtKB/TrEMBL
    A0A093JA01
    Related
    ENSSCUP00000001034.1, ENSSCUT00000001451.1
    Conserved Domains (3) summary
    pfam10427
    Location:927 → 1044
    Ago_hook; Argonaute hook
    pfam16608
    Location:1304 → 1568
    TNRC6-PABC_bdg; TNRC6-PABC binding domain
    cl17169
    Location:1570 → 1652
    RRM_SF; RNA recognition motif (RRM) superfamily

  4. XM_009665250.1 → XP_009663545.1  trinucleotide repeat-containing gene 6B protein isoform X4

    UniProtKB/TrEMBL
    A0A093JA01
    Related
    ENSSCUP00000001041.1, ENSSCUT00000001458.1
    Conserved Domains (2) summary
    pfam16608
    Location:1251 → 1515
    TNRC6-PABC_bdg; TNRC6-PABC binding domain
    cl17169
    Location:1517 → 1599
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
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