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BBX BBX high mobility group box domain containing [ Egretta garzetta (little egret) ]

Gene ID: 104129287, updated on 12-Mar-2024

Summary

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Gene symbol
BBX
Gene description
BBX high mobility group box domain containing
Locus tag
Z169_08894
Gene type
protein coding
RefSeq status
MODEL
Organism
Egretta garzetta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Pelecaniformes; Ardeidae; Egretta
Orthologs
human mouse all
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Genomic context

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See BBX in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
101 current ASM68718v1 (GCF_000687185.1) Unplaced Scaffold NW_009260192.1 (2415162..2556564)

NW_009260192.1Genomic Context describing neighboring genes Neighboring gene activated leukocyte cell adhesion molecule Neighboring gene Cbl proto-oncogene B Neighboring gene uncharacterized LOC118452634 Neighboring gene CD47 molecule

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009260192 Unplaced Scaffold Reference ASM68718v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
HMG box transcription factor BBX
Names
BBX, HMG-box containing

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Egretta garzetta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM68718v1 Primary Assembly

Genomic

  1. NW_009260192.1 Reference ASM68718v1 Primary Assembly

    Range
    2415162..2556564
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035897564.1 → XP_035753457.1  HMG box transcription factor BBX isoform X1

    UniProtKB/TrEMBL
    A0A091JGE0
    Conserved Domains (2) summary
    cd01388
    Location:79 → 150
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:192 → 343
    DUF2028; Domain of unknown function (DUF2028)

  2. XM_035897572.1 → XP_035753465.1  HMG box transcription factor BBX isoform X5

    UniProtKB/TrEMBL
    A0A091JGE0
    Conserved Domains (2) summary
    cd01388
    Location:79 → 150
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:192 → 343
    DUF2028; Domain of unknown function (DUF2028)

  3. XM_035897569.1 → XP_035753462.1  HMG box transcription factor BBX isoform X2

    UniProtKB/TrEMBL
    A0A091JGE0
    Conserved Domains (2) summary
    cd01388
    Location:79 → 150
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:192 → 343
    DUF2028; Domain of unknown function (DUF2028)

  4. XM_035897570.1 → XP_035753463.1  HMG box transcription factor BBX isoform X3

    UniProtKB/TrEMBL
    A0A091JGE0
    Conserved Domains (2) summary
    cd01388
    Location:79 → 150
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:192 → 307
    DUF2028; Domain of unknown function (DUF2028)

  5. XM_035897571.1 → XP_035753464.1  HMG box transcription factor BBX isoform X4

    UniProtKB/TrEMBL
    A0A091JGE0
    Conserved Domains (2) summary
    cd01388
    Location:79 → 150
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:192 → 316
    DUF2028; Domain of unknown function (DUF2028)

  6. XM_035897573.1 → XP_035753466.1  HMG box transcription factor BBX isoform X6

    UniProtKB/TrEMBL
    A0A091JGE0
    Conserved Domains (2) summary
    cd01388
    Location:79 → 150
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:192 → 295
    DUF2028; Domain of unknown function (DUF2028)

  7. XM_035897574.1 → XP_035753467.1  HMG box transcription factor BBX isoform X7

    UniProtKB/TrEMBL
    A0A091JGE0
    Conserved Domains (1) summary
    pfam09667
    Location:111 → 262
    DUF2028; Domain of unknown function (DUF2028)

  8. XM_035897575.1 → XP_035753468.1  HMG box transcription factor BBX isoform X8

    UniProtKB/TrEMBL
    A0A091JGE0
    Conserved Domains (2) summary
    cd01388
    Location:1 → 67
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:109 → 260
    DUF2028; Domain of unknown function (DUF2028)

  9. XM_035897576.1 → XP_035753469.1  HMG box transcription factor BBX isoform X9

    UniProtKB/TrEMBL
    A0A091JGE0
    Conserved Domains (1) summary
    pfam09667
    Location:52 → 203
    DUF2028; Domain of unknown function (DUF2028)

  10. XM_035897567.1 → XP_035753460.1  HMG box transcription factor BBX isoform X1

    UniProtKB/TrEMBL
    A0A091JGE0
    Conserved Domains (2) summary
    cd01388
    Location:79 → 150
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:192 → 343
    DUF2028; Domain of unknown function (DUF2028)

  11. XM_035897577.1 → XP_035753470.1  HMG box transcription factor BBX isoform X9

    UniProtKB/TrEMBL
    A0A091JGE0
    Conserved Domains (1) summary
    pfam09667
    Location:52 → 203
    DUF2028; Domain of unknown function (DUF2028)

  12. XM_035897565.1 → XP_035753458.1  HMG box transcription factor BBX isoform X1

    UniProtKB/TrEMBL
    A0A091JGE0
    Conserved Domains (2) summary
    cd01388
    Location:79 → 150
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:192 → 343
    DUF2028; Domain of unknown function (DUF2028)

  13. XM_035897568.1 → XP_035753461.1  HMG box transcription factor BBX isoform X1

    UniProtKB/TrEMBL
    A0A091JGE0
    Conserved Domains (2) summary
    cd01388
    Location:79 → 150
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:192 → 343
    DUF2028; Domain of unknown function (DUF2028)

  14. XM_035897579.1 → XP_035753472.1  HMG box transcription factor BBX isoform X5

    UniProtKB/TrEMBL
    A0A091JGE0
    Conserved Domains (2) summary
    cd01388
    Location:79 → 150
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:192 → 343
    DUF2028; Domain of unknown function (DUF2028)

  15. XM_035897580.1 → XP_035753473.1  HMG box transcription factor BBX isoform X6

    UniProtKB/TrEMBL
    A0A091JGE0
    Conserved Domains (2) summary
    cd01388
    Location:79 → 150
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:192 → 295
    DUF2028; Domain of unknown function (DUF2028)

  16. XM_035897566.1 → XP_035753459.1  HMG box transcription factor BBX isoform X1

    UniProtKB/TrEMBL
    A0A091JGE0
    Conserved Domains (2) summary
    cd01388
    Location:79 → 150
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:192 → 343
    DUF2028; Domain of unknown function (DUF2028)
Nucleotide Protein
Heading Accession and Version

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