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KDM5B lysine demethylase 5B [ Egretta garzetta (little egret) ]

Gene ID: 104122023, updated on 12-Mar-2024

Summary

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Gene symbol
KDM5B
Gene description
lysine demethylase 5B
Locus tag
Z169_04081
Gene type
protein coding
RefSeq status
MODEL
Organism
Egretta garzetta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Pelecaniformes; Ardeidae; Egretta
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
101 current ASM68718v1 (GCF_000687185.1) Unplaced Scaffold NW_009258891.1 (982627..1030907, complement)

NW_009258891.1Genomic Context describing neighboring genes Neighboring gene leucine zipper like post translational regulator 1 Neighboring gene importin 9 Neighboring gene tubulin alpha-8 chain Neighboring gene kelch like family member 12

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009258891 Unplaced Scaffold Reference ASM68718v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific demethylase 5B
Names
Lysine-specific demethylase 5B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Egretta garzetta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM68718v1 Primary Assembly

Genomic

  1. NW_009258891.1 Reference ASM68718v1 Primary Assembly

    Range
    982627..1030907 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035889742.1 → XP_035745635.1  lysine-specific demethylase 5B

    UniProtKB/TrEMBL
    A0A091ITN3
    Conserved Domains (8) summary
    COG5034
    Location:1080 → 1187
    TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
    cd15603
    Location:277 → 322
    PHD1_KDM5B; PHD finger 1 found in lysine-specific demethylase 5B (KDM5B)
    cd15607
    Location:1144 → 1187
    PHD2_KDM5B; PHD finger 2 found in lysine-specific demethylase 5B (KDM5B)
    cd15687
    Location:1454 → 1503
    PHD3_KDM5B; PHD finger 3 found in lysine-specific demethylase 5B (KDM5B)
    cd16874
    Location:63 → 152
    ARID_KDM5B; ARID/BRIGHT DNA binding domain of lysine-specific demethylase 5B (KDM5B)
    pfam02373
    Location:452 → 568
    JmjC; JmjC domain, hydroxylase
    pfam02928
    Location:658 → 710
    zf-C5HC2; C5HC2 zinc finger
    pfam08429
    Location:723 → 1052
    PLU-1; PLU-1-like protein
Nucleotide Protein
Heading Accession and Version

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