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CLSTN1 calsyntenin 1 [ Fulmarus glacialis (Northern fulmar) ]

Gene ID: 104083407, updated on 12-Mar-2024

Summary

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Gene symbol
CLSTN1
Gene description
calsyntenin 1
Locus tag
N327_07248
Gene type
protein coding
RefSeq status
MODEL
Organism
Fulmarus glacialis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Procellariiformes; Procellariidae; Fulmarus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
100 current ASM69083v1 (GCF_000690835.1) Unplaced Scaffold NW_009192015.1 (9351..39348)

NW_009192015.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009192015.1 Unplaced Scaffold Reference ASM69083v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables X11-like protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables amyloid-beta binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables kinesin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calsyntenin-1
Names
Calsyntenin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fulmarus glacialis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69083v1

Genomic

  1. NW_009192015.1 Reference ASM69083v1

    Range
    9351..39348
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009586883.1 → XP_009585178.1  calsyntenin-1

    UniProtKB/TrEMBL
    A0A093IFE4
    Conserved Domains (1) summary
    cd11304
    Location:12 → 130
    Cadherin_repeat; Cadherin tandem repeat domain
Nucleotide Protein
Heading Accession and Version

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