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SYF2 SYF2 pre-mRNA splicing factor [ Phalacrocorax carbo (great cormorant) ]

Gene ID: 104039383, updated on 16-Apr-2024

Summary

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Gene symbol
SYF2
Gene description
SYF2 pre-mRNA splicing factor
Locus tag
N336_06741
Gene type
protein coding
RefSeq status
MODEL
Organism
Phalacrocorax carbo
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Suliformes; Phalacrocoracidae; Phalacrocorax
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 22
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_04 current bPhaCar2.1 (GCF_963921805.1) 22 NC_087534.1 (3981308..3984603)
100 previous assembly ASM70892v1 (GCF_000708925.1) Unplaced Scaffold NW_009155186.1 (631..2362)

Chromosome 22 - NC_087534.1Genomic Context describing neighboring genes Neighboring gene chloride intracellular channel 4 Neighboring gene RUNX family transcription factor 3 Neighboring gene arginine and serine rich protein 1 Neighboring gene transmembrane protein 50A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
part_of Prp19 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of post-mRNA release spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-splicing factor SYF2
Names
Pre-mRNA-splicing factor SYF2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_963921805.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bPhaCar2.1

Genomic

  1. NC_087534.1 Reference bPhaCar2.1

    Range
    3981308..3984603
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_064471248.1 → XP_064327318.1  pre-mRNA-splicing factor SYF2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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