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SF3B1 splicing factor 3b subunit 1 [ Pelecanus crispus (Dalmatian pelican) ]

Gene ID: 104027387, updated on 12-Mar-2024

Summary

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Gene symbol
SF3B1
Gene description
splicing factor 3b subunit 1
Locus tag
N334_03537
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelecanus crispus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Pelecaniformes; Pelecanidae; Pelecanus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See SF3B1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
100 current ASM68737v1 (GCF_000687375.1) Unplaced Scaffold NW_009070488.1 (6354..23680)

NW_009070488.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009070488.1 Unplaced Scaffold Reference ASM68737v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in spliceosomal complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U12-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor 3B subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelecanus crispus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM68737v1

Genomic

  1. NW_009070488.1 Reference ASM68737v1

    Range
    6354..23680
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009478120.1 → XP_009476395.1  splicing factor 3B subunit 1

    See identical proteins and their annotated locations for XP_009476395.1

    UniProtKB/TrEMBL
    A0A091SJY9
    Conserved Domains (6) summary
    smart01104
    Location:223 → 369
    CTD; Spt5 C-terminal nonapeptide repeat binding Spt4
    COG5181
    Location:433 → 1291
    HSH155; U2 snRNP spliceosome subunit [RNA processing and modification]
    cd00020
    Location:967 → 1068
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    pfam08920
    Location:319 → 430
    SF3b1; Splicing factor 3B subunit 1
    pfam12815
    Location:245 → 317
    CTD; Spt5 C-terminal nonapeptide repeat binding Spt4
    sd00044
    Location:837 → 861
    HEAT; HEAT repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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