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USP25 ubiquitin specific peptidase 25 [ Nipponia nippon (crested ibis) ]

Gene ID: 104023353, updated on 12-Mar-2024

Summary

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Gene symbol
USP25
Gene description
ubiquitin specific peptidase 25
Locus tag
Y956_06834
Gene type
protein coding
RefSeq status
MODEL
Organism
Nipponia nippon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Pelecaniformes; Threskiornithidae; Nipponia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
100 current ASM70822v1 (GCF_000708225.1) Unplaced Scaffold NW_008998982.1 (5872984..5945190)

NW_008998982.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104023342 Neighboring gene nuclear receptor interacting protein 1 Neighboring gene chromosome unknown open reading frame, human C21orf91 Neighboring gene CXADR Ig-like cell adhesion molecule

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008998982.1 Unplaced Scaffold Reference ASM70822v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein stability IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 25
Names
Ubiquitin carboxyl-terminal hydrolase 25

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nipponia nippon Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70822v1 Primary Assembly

Genomic

  1. NW_008998982.1 Reference ASM70822v1 Primary Assembly

    Range
    5872984..5945190
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009477158.1 → XP_009475433.1  ubiquitin carboxyl-terminal hydrolase 25

    UniProtKB/TrEMBL
    A0A091UQ49
    Conserved Domains (2) summary
    cd02665
    Location:168 → 650
    Peptidase_C19I; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    cd14354
    Location:14 → 58
    UBA_UBP25; UBA domain found in ubiquitin carboxyl-terminal hydrolase 25 (UBP25) and similar proteins
Nucleotide Protein
Heading Accession and Version

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