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NBEA neurobeachin [ Nipponia nippon (crested ibis) ]

Gene ID: 104020280, updated on 12-Mar-2024

Summary

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Gene symbol
NBEA
Gene description
neurobeachin
Locus tag
Y956_09583
Gene type
protein coding
RefSeq status
MODEL
Organism
Nipponia nippon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Pelecaniformes; Threskiornithidae; Nipponia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
58
Annotation release Status Assembly Chr Location
100 current ASM70822v1 (GCF_000708225.1) Unplaced Scaffold NW_009002853.1 (52673..567212, complement)

NW_009002853.1Genomic Context describing neighboring genes Neighboring gene mab-21 like 1 Neighboring gene putative methyltransferase KIAA1456 Neighboring gene replication factor C subunit 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009002853.1 Unplaced Scaffold Reference ASM70822v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein localization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neurobeachin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nipponia nippon Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70822v1 Primary Assembly

Genomic

  1. NW_009002853.1 Reference ASM70822v1 Primary Assembly

    Range
    52673..567212 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009473667.1 → XP_009471942.1  neurobeachin isoform X1

    UniProtKB/TrEMBL
    A0A091VV99
    Conserved Domains (8) summary
    COG2319
    Location:2594 → 2893
    WD40; WD40 repeat [General function prediction only]
    pfam02138
    Location:2246 → 2522
    Beach; Beige/BEACH domain
    pfam06469
    Location:1925 → 2091
    DUF1088; Domain of Unknown Function (DUF1088)
    pfam14844
    Location:2117 → 2214
    PH_BEACH; PH domain associated with Beige/BEACH
    pfam15787
    Location:430 → 701
    DUF4704; Domain of unknown function (DUF4704)
    sd00039
    Location:2683 → 2737
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:2636 → 2893
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cl22861
    Location:213 → 360
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

  2. XM_009473668.1 → XP_009471943.1  neurobeachin isoform X2

    UniProtKB/TrEMBL
    A0A091VV99
    Conserved Domains (8) summary
    COG2319
    Location:2562 → 2861
    WD40; WD40 repeat [General function prediction only]
    pfam02138
    Location:2214 → 2490
    Beach; Beige/BEACH domain
    pfam06469
    Location:1893 → 2059
    DUF1088; Domain of Unknown Function (DUF1088)
    pfam14844
    Location:2085 → 2182
    PH_BEACH; PH domain associated with Beige/BEACH
    pfam15787
    Location:430 → 701
    DUF4704; Domain of unknown function (DUF4704)
    sd00039
    Location:2651 → 2705
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:2604 → 2861
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cl22861
    Location:213 → 360
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
Nucleotide Protein
Heading Accession and Version

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