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ITGB5 integrin subunit beta 5 [ Nipponia nippon (crested ibis) ]

Gene ID: 104018787, updated on 12-Mar-2024

Summary

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Gene symbol
ITGB5
Gene description
integrin subunit beta 5
Locus tag
Y956_05766
Gene type
protein coding
RefSeq status
MODEL
Organism
Nipponia nippon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Pelecaniformes; Threskiornithidae; Nipponia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current ASM70822v1 (GCF_000708225.1) Unplaced Scaffold NW_008998364.1 (830698..890987)

NW_008998364.1Genomic Context describing neighboring genes Neighboring gene heart development protein with EGF like domains 1 Neighboring gene mucin 13, cell surface associated Neighboring gene uridine monophosphate synthetase Neighboring gene kalirin RhoGEF kinase Neighboring gene guanine nucleotide-binding protein subunit alpha-14-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008998364.1 Unplaced Scaffold Reference ASM70822v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion mediated by integrin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of integrin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integrin beta-5
Names
Integrin beta-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nipponia nippon Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70822v1 Primary Assembly

Genomic

  1. NW_008998364.1 Reference ASM70822v1 Primary Assembly

    Range
    830698..890987
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009471971.1 → XP_009470246.1  integrin beta-5

    UniProtKB/TrEMBL
    A0A091UL91
    Conserved Domains (3) summary
    pfam00362
    Location:1 → 354
    Integrin_beta; Integrin, beta chain
    pfam07965
    Location:526 → 609
    Integrin_B_tail; Integrin beta tail domain
    pfam08725
    Location:636 → 679
    Integrin_b_cyt; Integrin beta cytoplasmic domain
Nucleotide Protein
Heading Accession and Version

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